In silico prospecting of the mtDNA of Macrobrachium amazonicum from transcriptome data.

BACKGROUND: Macrobrachium amazonicum is a freshwater prawn widely distributed in South America that is undergoing speciation, so the denomination "M. amazonicum complex" is used for it. The mitochondrial cytochrome c oxidase subunit I (COI) gene has been used to elucidate this speciation, but heteroplasmies and pseudogenes have been recorded, making separation difficult. Obtaining genes from cDNA (RNA) rather than genomic DNA is an effective tool to mitigate those two types of occurrences. The aim of this study was to assemble in silico the mitochondrial DNA (mtDNA) of the Amazonian coastal population of M. amazonicum inhabiting the state of Pará. RESULTS: Sequences were obtained from the prawn's transcriptome using the de novo approach. Six libraries of cDNA from the androgen gland, hepatopancreas, and muscle tissue were used. The mtDNA of M. amazonicum was 14,960 bp in length. It contained 13 protein-coding genes, 21 complete transfer RNAs, and the 12S and 16S subunits of ribosomal RNA. All regions were found on the light strand except tRNAGln, which was on the heavy strand. The control region (D-loop) was not recovered, making for a gap of 793 bp. The cladogram showed the formation of the well-defined Macrobrachium clade, with high support value in the established branches (91-100). The three-dimensional spatial conformation of the mtDNA-encoded proteins showed that most of them were mainly composed of major α-helices that typically shows in those proteins inserted in the membrane (mitochondrial). CONCLUSIONS: It was possible to assemble a large part of the mitochondrial genome of M. amazonicum in silico using data from other genomes deposited in GenBank and to validate it through the similarities between its COI and 16S genes and those from animals of the same region deposited in GenBank. Depositing the M. amazonicum mtDNA sequences in GenBank may help solve the taxonomic problems recorded for the species, in addition to providing complete sequences of candidate coding genes for use as biomarkers in ecological studies.

Food Restrictions Affect the Larval Metamorphosis and Early Juvenile Performance in a Neotropical Mangrove Fiddler Crab (Leptuca cumulanta).

Sporadic fluctuations in food availability may affect larval biology and post-metamorphic development in many marine invertebrates. In an experimental study in the laboratory, we investigated whether different regimes (1, 3, and 5 days) of initial starvation or feeding affect the survival and duration of the last planktotrophic larval stage (i.e., megalopa) of the neotropical mangrove fiddler crab Leptuca cumulanta. Newly metamorphosed crabs originating from megalopae starved for 1 and 3 days were cultured through the first 5 juvenile stages to further evaluate whether prior nutritional experience affects the post-larval performance of this species. All megalopae that were starved continuously died, while 80% of the larvae that were fed constantly metamorphosed successfully into the juvenile stage. Megalopae initially starved for 3 and 5 days exhibited lower survival (55% and 30% of larval metamorphosis, respectively) than larvae starved for only 1 day (85%) or fed constantly. The starvation periods (1, 3, and 5 days) also significantly prolonged the mean megalopal stage duration (12.8, 13.9, and 14.3 days, respectively) compared to the continuous feeding regime (10.6 days). Survival of the megalopae subjected to different periods of initial feeding (1, 3, and 5 days) was significantly lower (15.0%, 57.5%, and 62.5%, respectively) than survival of the larvae fed constantly. The mean megalopal stage duration, by contrast, did not vary among megalopae initially fed for 3 and 5 days or fed continuously (10.4 days). The larval starvation did not affect survival and carapace shape of juveniles, but it did alter their intermolt period, growth, and body size. These carryover effects were stronger in the first juvenile crab stage than in other juvenile stages. Our results indicate that the timing and duration of the starvation or feeding regime experienced by the megalopae may affect their successful survival and developmental period until metamorphosis to juvenile life. In addition, the preceding larval starvation associated with a prolonged larval period may also affect early juvenile performance in specific crab stages of L. cumulanta.

Development and functional morphology of the mouthparts and foregut in larvae and post-larvae of Macrobrachium jelskii (Decapoda: Palaemonidae).

The morphology of the mouthparts and foregut of the larvae and post-larvae of Macrobrachium jelskii was investigated to determine their functional roles in feeding, in order to understand the larval feeding behaviour and the changes that occur during its development. The mouthparts and foregut of the zoea I and II are morphologically similar, rudimentary and non-functional in feeding. Only in the final larval stage, zoea III, do the external mouthparts and foregut become structurally more complex and thus likely to play a potential role in feeding. Two behavioral trials (point of no return, point of reserve saturation) evaluated the resistance to starvation in zoea I, II, and III. The results indicate that they have sufficient nutritional reserves to permit them to complete metamorphosis without feeding. Overall, our results suggest that the zoea I and II of Macrobrachium jelskii engage in obligate lecithotrophy and zoea III in facultative lecithotrophy.

The complete larval development of the mud shrimp Upogebia vasquezi (Gebiidea: Upogebiidae) reared in the laboratory.

The larval development of Upogebia vasquezi consists of four zoeal stages and a megalopa. In the present study, each larval stage was described and illustrated in detail. The first two stages are re-described in order to provide a detailed comparison with the data available for this species recorded in a previous study. The morphological features of all the stages are compared with those of the larvae of other Upogebia species reported previously in the literature. Broad morphological similarities and distinctions were found among most Upogebia species. The main interspecific variations in the morphology of the zoeal stages are the segmentation pattern of the antennular endopod and number of aesthetascs, the number of setae on the scaphognathite and the presence or absence of a mandibular palp.

Mangrove sedimentary characteristics and implications for crab Ucides cordatus (Crustacea, Decapoda, Ucididae) distribution in an estuarine area of the Amazonian region / Características sedimentares de manguezal e implicações para a distribuição do caranguejo-uçá Ucides cordatus (Crustacea, Decapoda, Ucididae) em uma área estuarina amazônica

At the coastal zone sediments, water and organisms interact intensely. At equatorial tidal-dominated coast mangroves are abundant. These areas are well-known for their ecological importance. Considering the mangroves of Atlantic South America, the mangrove crab, Ucides cordatus has ecological and economic prominence. High densities of this crab are found on the Amazon coast. This study investigates the sediment distribution of the Bragança mangrove area (Amazon coast, Brazil) and its correlations with vegetation and mangrove crab distribution. Sediments of 47 sites, as well as crabs from sites with different sediment and vegetation, were sampled. Results show that surface sediment of the area is mainly composed by silt (59%), with 21% sand and 20% clay. Variations in sorting and skewness are the product of local variations in clay and sand content. The vegetation type was significantly correlated to mangrove crab characteristics, abundance and weight/size. Sediment characteristics are also substantially different according to the vegetation type. Areas where Avicennia germinans prevails have more sand and clay than areas of Rizophora mangle, in which silt is dominant and crabs were significantly heavier. The present results have showed that the distribution of sediments, crabs and vegetation at mangrove areas are strongly correlated. Thus, they should be studied in conjunction.

Na zona costeira, sedimentos, água e organismos interagem intensamente. Nas costas equatoriais dominadas por maré os manguezais são abundantes. Estas áreas são conhecidas por sua importância ecológica. No caso dos manguezais da costa atlântica da América do Sul o caranguejo-uçá Ucides cordatus (Linnaeus, 1763) se destaca por sua relevância ecológica e econômica, sendo que altas densidades deste organismo são encontradas na zona costeira amazônica. O presente estudo investiga a distribuição de sedimentos nos manguezais de Bragança (costa Amazônica, Brasil) e suas correlações com a vegetação e a distribuição do caranguejo-uçá. Quarenta e sete amostras de sedimento foram avaliadas, assim como caranguejos de 8 destas áreas foram coletados, onde o tipo dominante de vegetação foi também identificado. Os resultados demonstram que os sedimentos superficiais, assim como no extrato 0,8 a 1 m de profundidade, na área são principalmente compostos por silte (59%), incluindo em média 21% de areia e 20% de argila. O tipo de vegetação predominante foi significativamente correlacionado com a abundância e tamanho/peso dos caranguejos. As características sedimentares também foram substancialmente diferentes dependendo da vegetação. Áreas dominadas por Avicennia germinans tiveram mais areia e argila que as áreas dominadas por Rizophora mangle, onde a fração silte prevalece grandemente e os caranguejos eram significativamente maiores e mais abundantes. Os resultados demonstraram que sedimentos, invertebrados bentônicos e vegetação estão intimamente relacionados nos manguezais e devem ser estudados de maneira integrada.

New records of Fredius denticulatus (H. Milne-Edwards, 1853) and F. reflexifrons (Ortmann, 1897), and the eastern limits of the distribution of pseudothelphusid crabs (Crustacea: Decapoda) in Brazil

É registrada pela primeira vez a ocorrência de Fredius reflexifrons (Ortmann, 1897), um caranguejo da família Pseudothelphusidae de ampla distribuição na Amazônia e nas Guianas, no estado do Ceará, Nordeste do Brazil. São feitos registros adicionais de dessa espécie e de Fredius denticulatus (H. Milne-Edwards, 1853) para a região amazônica. É feita uma discussão sobre os limites orientais da distribuição da família Pseudothelphusidae no Brasil.